Continuation of Day 1...
We had more discussion about how to deal with the sequence modules, bytecode dependencies of the core module and related topics. Seems there is a general agreement about moving the current sequence code out of the core module into its own space. Will continue tomorrow morning, when Richard Holland is back.
On a different side of things, Christoph Gille, Jules Jacobsen and I were discussing how to provide a Model View Control interface for using various open source 3D visualization libraries (Jmol, RCSB Libraries, Astex Viewer) together with Biojava.
We spent a lot of time discussing today, hope to be able to get more code done tomorrow.